PUBLICATIONS

• Refereed Publications (by year or topic)

• Conference Publications

• Presentations

  
  

Refereed Publications (by year)

• Sreenath SN, Cho K-H, Wellstead P, Modelling the dynamics of signaling pathways, Systems Biology: Essays in Biochemistry , Portland Press. In Press.
• Wolkenhauer O, Sreenath N, Wellstead P, Cho K-H, Systems and control theory for medical systems biology, Handbook of Research on Systems Biology Applications in Medicine. In Press.
• Millat T, Sreenath SN, Soebiyanto RP, Avva J, Cho KH, and Wolkenhauer O. The role of dynamic stimulation pattern in the analysis of bistable intracellular networks. in Biosystems 92(3): 270-281.
• J. M. Furlan, J. R. Kadambi, K. A. Loparo, S. N. Sreenath, S. Manjila.
  CSF Flow Characterization within a Model of the Cerebral Ventricular System Using Particle Image Velocimetry ISFV13 - 13th International Symposium on Flow Visualization FLUVISU12 - 12th French Congress on Visualization in Fluid Mechanics July 1-4, 2008, Nice, France
• J.M. Furlan, J.R. Kadambi, K. Loparo, S.N. Sreenath, S. Manjila.
  Investigation of CSF flow characteristics within a rapid prototype-based model of the cerebral ventricular system using PIV. The 19th International Symposium on Transport Phenomena 17-20 August, 2008, Reykjavik, ICELAND
  

• Sreenath SN, Mesarovic MD, Soebiyanto RP, Wolkenhauer O, and Loparo KA. Coordination principles in complex systems biology. Submitted .
• Wolkenhauer O, Mesarovic M, Sreenath SN, Wellstead P, Rolfs A. From regulation, control and adaptation to the coordination of cell function. In Regulation. Laubichler M, Rheinsberger H.-J, Hammerstein P (eds.), Vienna Series of Theoretical Biology, MIT Press. In press
• Wolkenhauer O, Mesarovic M, Wellstead P. A plea for more theory in molecular biology. In Systems Biology - Applications and Perspectives. Bringmann P, Butcher EC, Parry G, Weiss B (eds.). pp 117-137. Springer-Verlag, Berlin Heidelberg, 2007 (ISBN 978-3-540-31338-0).
• Soebiyanto RP, Sreenath SN, Qu CK, Loparo KA, Bunting KD. Complex systems biology approach to understanding coordination of JAK-STAT signaling. BioSystems (In Press), 2007.
• Sreenath SN, Soebiyanto R, Mesarovic MD, Wolkenhauer O. Coordination of crosstalk between MAPK-PKC pathways: an exploratory study. IET Systems Biology, 1(1): 33-40, Jan 2007.

• Mesarovic MD and Sreenath SN. Beyond flat earth perspective in systems biology. Biological Theory, MIT Press, 1(1):33-34, 2006 Winter, Posted Online 2006 May.

• Wolkenhauer O, Mesarovic M. Feedback dynamics and cell function: Why systems biology is called Systems Biology. Mol. Biosyst. 1(1):14-6, May 2005.
• Wolkenhauer O, Sreenath SN, Wellstead P, Ullah M, Cho KH. A systems- and signal-oriented approach to intracellular dynamics. Biochem Soc Trans. 33(3):507-15, Jun 2005.
• Scher MS, Waisanen H, Loparo K, Johnson MW. Prediction of neonatal state and maturational change using dimensional analysis. Journal of Clinical Neurophysiology 22(3):159-65, Jun 2005.
• Scher MS, Turnbull J, Loparo K, Johnson MW. Automated state analysis: applications to neonatal neurointensive care. Journal of Clinical Neurophysiology 22(4):256-70, Aug 2005.

• Mesarovic MD., Sreenath SN, and Keene JD. Search for Organising principles: understanding in systems biology. IEE Systems Biology, 1(1):19-27, Jun 2004.
• Sinha AK, Loparo KA, Richoux WJ. A new system theoretic classifier for detection and prediction of epileptic seizures: a preliminary study. Conf. Proc. IEEE Eng. Med. Biol. Soc. 1:415-8, 2004.

• Turnbull JP, Loparo KA, Johnson MW, Scher MS. Automated detection of trace alternant during sleep in healthy full-term neonates using discrete wavelet transform. Clinical Neurophysiology 112:1893-1900, 2001.

Refereed Publications (by topic)

• Sreenath SN, Mesarovic MD, Soebiyanto RP, Wolkenhauer O, and Loparo KA. Coordination principles in complex systems biology. Submitted.
• Wolkenhauer O, Mesarovic M, Sreenath SN, Wellstead P, Rolfs A. From regulation, control and adaptation to the coordination of cell function. In Regulation. Laubichler M, Rheinsberger H.-J, Hammerstein P (eds.), Vienna Series of Theoretical Biology, MIT Press. In press
• Wolkenhauer O, Mesarovic M, Wellstead P. A plea for more theory in molecular biology. In Systems Biology - Applications and Perspectives. Bringmann P, Butcher EC, Parry G, Weiss B (eds.). pp 117-137. Springer-Verlag, Berlin Heidelberg, 2007 (ISBN 978-3-540-31338-0).
• Mesarovic MD and Sreenath SN. Beyond flat earth perspective in systems biology. Biological Theory, MIT Press, 1(1):33-34, 2006 Winter, Posted Online 2006 May.
• Wolkenhauer O, Mesarovic M. Feedback dynamics and cell function: Why systems biology is called Systems Biology. Mol. Biosyst. 1(1):14-6, May 2005.
• Mesarovic MD., Sreenath SN, and Keene JD. Search for Organising principles: understanding in systems biology. IEE Systems Biology, 1(1):19-27, Jun 2004.

• Millat T, Sreenath SN, Soebiyanto RP, Avva J, Cho KH, and Wolkenhauer O. The role of dynamic stimulation pattern in the analysis of bistable intracellular networks. Submitted.
• Soebiyanto RP, Sreenath SN, Qu CK, Loparo KA, Bunting KD. Complex systems biology approach to understanding coordination of JAK-STAT signaling. BioSystems (In Press), 2007.
• Sreenath SN, Soebiyanto R, Mesarovic MD, Wolkenhauer O. Coordination of crosstalk between MAPK-PKC pathways: an exploratory study. IET Systems Biology, 1(1): 33-40, Jan 2007.
• Wolkenhauer O, Sreenath SN, Wellstead P, Ullah M, Cho KH. A systems- and signal-oriented approach to intracellular dynamics. Biochem Soc Trans. 33(3):507-15, Jun 2005.

• Levy T, Loparo KA, Scher M. Automated scoring of Neonatal Sleep. Submitted to IEEE.
• Turnbull JP, Loparo KA, Johnson MW, Scher MS. Automated detection of trace alternant during sleep in healthy full-term neonates using discrete wavelet transform. Clinical Neurophysiology 112:1893-1900, 2001.
• Scher MS, Waisanen H, Loparo K, Johnson MW. Prediction of neonatal state and maturational change using dimensional analysis. Journal of Clinical Neurophysiology 22(3):159-65, Jun 2005.
• Scher MS, Turnbull J, Loparo K, Johnson MW. Automated state analysis: applications to neonatal neurointensive care. Journal of Clinical Neurophysiology 22(4):256-70, Aug 2005.
• Waisanen H, Loparo KA, Scher MS. Neuroplasticity in neonates, part 1: Computational approaches to dimensional analysis of EEG. Submitted to IEEE Transactions on Biomedical Engineering.
• Waisanen H, Loparo KA, Scher MS. Neuroplasticity in neonates, part 2: Application of correlation dimension to dimensional analysis of neonatal EEG. Submitted to IEEE Transactions on Biomedical Engineering.
• Sinha AK, Loparo KA, Richoux WJ. A new system theoretic classifier for detection and prediction of epileptic seizures: a preliminary study. Conf. Proc. IEEE Eng. Med. Biol. Soc. 1:415-8, 2004.

Conference Publications